• Is there a spreadsheet
• Data should be jamboreed soon (within a month)
• Go to Seqbank/vtr/hpv
• Generally speaking run2 is the one to use
• Experiments are on Wiki: https://tfwiki.cchmc.org/wiki/VTR/Samples_for_paper
• Get Paths to analysis files from seqbank: https://tf.cchmc.org/seqbank/admin/server/experiment/
• use idr conservative peaks
• Lot of APB1

Analyzing the data

• Half of the figures are done through nextflow
• Lee did RNA, Phil did other stuff
• Only care about figures 1-4
• Just point input to output of seqbank directories (don't write to seqbank directories)

Timeline

• First draft of figures by thanksgiving