-
1.2 fold change or more (20% fold changes)
- somewhat arbitrary decision based on inflection point of EBV analysis (Lee figure)
-
Each of the three vtrs (), then by strain
- one big matrix to estimate dispersion????
- vtrs vs control
- strains vs control
-
Run Andrew's pipeline (mixtape)
-
Spark plots for cluster summarization
-
line plots (each sample is a line)
- clusters are subfigures
- Y axis is Z scaled minus-ctrl score
- X axis is HPV strain (or condition)
-
line plots (each sample is a line)
-
Spark plots for cluster summarization
Rerun ATAC and ChIP pipelines
- 1 in 3 will be better