PCA meeting

  • Find enumber that failed and change in seqbank
  • Fix Chip seq label on ATAC plots
  • Add percentages of PCAs

Find DEGs relative to control

  • make heatmap of DEGs

  • K-means clustering

  • Find all DEGs within celltype

  • Find all DEGs within protein

Pairwise RELI for ChIP-seq and ATAC

  • After finding differential peaks
  • overlap and enrichment heatmaps

Findings

  • Cluster by cell type
  • UMAPs didn't show separation except for cell type