• Alphafold is reliable enough to not do transient

Two PCA plots

• One with transient
• one without transient

How to do PCA between samples

Graph

Tss enrichments

TSS enrichment

Below 4 needs discussion

Peak calls

• Less than 50000 peaks is bad

Ask Sreeja/Andrew

• contribute to wiki page (tss enrichment for ATAC)
• Standards link: https://tfwiki.cchmc.org/wiki/ENCODE#ATAC-seq