Agenda For PU1

TODO Reporting Summary Form

Need to fill out reporting summary form for paper with Molly

DONE Find threshold to remove weird samples (pairwise reli) ARCHIVE

DONE Alzheimer's disease examination ARCHIVE

DONE Finish first draft of manuscript [2/2] ARCHIVE

DONE Extra Analysis ARCHIVE

DONE Unify genesets [1/1] ARCHIVE

Figure 1

DONE Create UMAP and PCA (Part B) [3/3] ARCHIVE

Figure 2

DONE Percent ChIP peaks (Part C) [1/1] ARCHIVE

DONE GREAT analysis (Part D) [6/7] ARCHIVE

Figure 3

DONE Part A [1/2] ARCHIVE

DONE SPAMO analysis (Part C) ARCHIVE

Figure 4 [2/2]

DONE Phenotype RELI (Part A) [3/3] ARCHIVE

DONE Mario Analysis ARCHIVE

Nextflow Pipeline

DONE Dockerize/Nixify R dependencies ARCHIVE

DONE Draft Methods ARCHIVE

DONE Browser sessions ARCHIVE

Papers to Read

DONE Harley et al ARCHIVE

DONE Figure 5 ARCHIVE

DONE Figure 6 ARCHIVE