PU1-meeting-07-31-2025

Attendies

  • David
  • Matt
  • Leah
  • Molly
  • Lucinda
  • Shreeja

Points of discussion

  • MARIO Results
  • Heatmaps
  • Updated Dotplot
  • Agenda for next meeting

Figure 1

  • microglia come from glass lab
  • Adaptive immune cells, Inncate immune cells
  • First letter is Captial, lower is after (sentence case)
  • No dashes
  • No gridlines

B

  • UMAP of peaks, shows that peaks clusterable into cell types
  • Shows that peaks are clusterable by cell type
  • How many datasets for each TF?

Figure 2

A

  • Clarify cumulative number of datasets

B

  • should respect order in A

C

  • Orient Vertically

D

  • remove specific,
  • Use biggest size and get rid of fold enrichment

Figure 3

A.

Delete

B.

Move to A

  • Rank by green (PU.1) and move green to bottom, make coloring consistent

New B.

  • List of composite elements from Matt and Diego
  • Into heatmap (will take a while)

Figure 4

  • Union set Categories + EBV+ + EBV-
  • use 10 or more loci
  • 10-6 P value
  • Separate into 3 excel sheets for disease-only, cell-count, all

Figure 5

  • SOme of the allelic data looks like genome mismatch (Xioting)