• How to restrict terms (top N, P value cutoff?)
• How to set P value cutoff?
• Some p-values are still not able to be calculated, may need to increase precision again

TODO VCF files

• Schreeja ran into error downloading
• The tool is very unstable

Figure 1

• Layout (avoid whitespace)
• A is top row, B and C is bottom row

Figure 2

Part A

• New Version is good
• getting rid of blue bars is good idea
• Average by number of datasets

Part D

• Merge two long name bed files
• Add 0.01 p value cutoff
• correct p value for number of go-slim categories

Figure 3

C.

• Known composite PU.1 motif
• Diego is the keeper of motif database
  • ask how many motifs involve PU.1/SPI1
• Motifs are in Matts inbox

Peak sets for HOMER

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• representative peaks for B cells?
• Trackgen?

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