Figure 1 Part B Supplemental
Add PCA to figure 1 part B pipeline output
Try redoing Figure1 with different gene sets, removing the "shared" peaks
- Will need to bedtools subtract?
Restrict to cell-type specific peaks and redo UMAP and PCA
Figure 3 adjacent
- Small heatmap showing correlation between expression levels of PU.1 and other TF families
- Matt will create TF family map
- DICE resource will be used for data
Figure 5D
Remake figure, with bQTL effect size on the X axis instead of Mario Score
Look into human Immunological genome project
to find
data website
- Create metadata for all of our data
- Bedfiles, links to all fastq files (including those on GEO)
data website Plan
- do we want
Meeting notes
<2026-04-02 Thu>
- Halt work on HPV till reviews are done