• Committee
• Fisher's method (heatmaps)
• Umap Advice

Draft Committee email

Hi Dr. Wells,

I am a new PhD student in Matthew Weirauch's lab and he recommended you as as potential committee member. I don't have a lot of details yet, but my project will make use of RNA-seq, ATAC-seq, and ChIP-Seq datasets relating to HPV. If you are willing to be a committee member, let me know!

Best,

David

How many details should I include about the data?

• I don't know much about how it was generated yet
• Probably will need to talk to Phil

UMAP

• Bins for peak counts

My plan pre-next week's meeting

• I want to add an experiment UMAP
• Better bins?
• Finish up heatmaps
• Finish up figure methods/legends
• arbitrary p value that looks good for heatmaps

• permutations of the p values